Atlas entry
seqbench. com
157 capabilities over MCP. First atlas observation.
What changed
First atlas observation. Atlas history
Surfaces
5 protocols checked
| ARD | Not found | No document retrieved |
|---|---|---|
| A2A | Not found | 0 skills |
| MCP | Valid | 2026-07-28 · 153 tools · resources not advertised · 4 prompts |
| OpenAPI | Not detected | 0 operations |
| WebMCP | Not detected | 0 declarative form tools · experimental |
Exact states and meaning
- ARDabsent
Exact state: not found · No document retrieved
The supported discovery location returned no matching document.
Not found does not prove the service exposes no such interface elsewhere.
Not observed / not fetched
- A2Aabsent
Exact state: not found · 0 skills
The supported discovery location returned no matching document.
Not found does not prove the service exposes no such interface elsewhere.
Not observed / not fetched
- MCPobserved
Exact state: valid · Revision 2026-07-28 · 153 tools · resources not advertised · 4 prompts
A usable protocol document was retrieved and validated.
Directly observed
- OpenAPIabsent
Exact state: not detected · 0 operations
No endpoint was established from the evidence and scope that InterfaceDelta inspected.
Not detected does not prove that no endpoint exists.
Not observed / not fetched
- WebMCPabsent
Exact state: not detected · 0 declarative form tools · experimental
No named declarative WebMCP form tools were observed in the origin root HTML.
Script-registered tools and other pages are not observed, so this does not mean the site has no WebMCP tools.
Not observed / not fetched
Capabilities
Showing 157 of 157.
| Tool and inputs | Status |
|---|---|
| accession* | Observed |
| |
| ampliconBp, forwardPrimer*, highComplexityTemplate, polymerase* and 1 more | Observed |
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| length, target*, wing | Observed |
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| circular, dataset, enzyme, fragments* and 4 more | Observed |
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| circular, forwardPrimer*, maxCandidates, maxMismatches and 5 more | Observed |
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| barcodes*, metric | Observed |
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| count, exclude, existing, gcMax and 6 more | Observed |
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| controlBases*, controlChannels*, editedBases*, editedChannels* and 10 more | Observed |
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| editor, frameStart, target*, targetPosition | Observed |
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| args, input*, tool* | Observed |
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| rid* | Observed |
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| database, evalue, hitlistSize, megablast and 3 more | Observed |
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| radiusCm*, rcf, rpm | Observed |
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| circular, endPrimerLength, maxOrfs, minOrfAa and 1 more | Observed |
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| agarosePercent, annealingTempC, colonies, enzymes and 23 more | Observed |
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| agarosePercent, annealingTempC, colonies, enzymes and 23 more | Observed |
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| armLength, armTmTarget, chewBackLen, circular and 21 more | Observed |
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| frameStart, minRareRun, organism, rareThreshold and 1 more | Observed |
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| inputType, organism, protein* | Observed |
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| avoidEnzymes, crypticOrfMinAa, frameStart, gcHigh and 6 more | Observed |
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| avoidEnzymes, crypticOrfMinAa, frameStart, gcHigh and 4 more | Observed |
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| mergeGap, minGcPct, minLength, minObsExp and 3 more | Observed |
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| minScore, nuclease, searchReverseStrand, sequence* | Observed |
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| armLength, blockPam, designGenotypingPrimers, editEnd and 8 more | Observed |
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| maxMismatches, nuclease, protospacer* | Observed |
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| contexts, searchReverseStrand, sequence, tracr | Observed |
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| sequenceA*, sequenceB* | Observed |
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| agarosePercent, alternatives*, circular, enzymes and 3 more | Observed |
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| length, massNg, sequence, targetConcentration and 4 more | Observed |
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| a*, b*, bothStrands, maxRuns and 2 more | Observed |
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| enzymeA*, enzymeB* | Observed |
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| altAllele, controlBases*, controlChannels*, cutPosition and 19 more | Observed |
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| lmax | Observed |
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| guides*, includeGenbank, insulate, lmax and 1 more | Observed |
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| reactions* | Observed |
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| protocolName, reactions* | Observed |
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| reactions* | Observed |
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| circular, host, sequence* | Observed |
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| clusterCols, clusterRows, distanceMetric, genes* and 4 more | Observed |
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| dropDuplicateSequences, input*, maxLength, minLength and 2 more | Observed |
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| input*, qualityOffset | Observed |
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| input*, minLength, qualityOffset, qualityThreshold | Observed |
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| limit, minAaLength, requireStop, sequence* | Observed |
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| caseMode, convert, reverse, sequence* and 2 more | Observed |
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| background, collections, genes*, maxTermSize and 1 more | Observed |
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| sequence* | Observed |
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| bandDistances, ladder*, ladderDistances* | Observed |
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| gene* | Observed |
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| gene* | Observed |
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| gene* | Observed |
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| assembly*, downstream, format, gene* and 1 more | Observed |
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| count*, dataset, fixed, forbidden and 2 more | Observed |
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| compareToNamedSet, dataset, overhangs*, riskThreshold | Observed |
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| enzyme, parts* | Observed |
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| enzyme, positions* | Observed |
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| variant* | Observed |
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| jobId* | Observed |
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| from*, ids*, taxId, to* | Observed |
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| caseSensitive, sequences* | Observed |
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| circular, forwardPrimer, maxMismatches, maxProductLength and 2 more | Observed |
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| addSecondaryMismatch, alleleA, alleleB, maxAmplicon and 4 more | Observed |
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| insertLengthBp, insertNgPerUl, inserts, molarRatio and 5 more | Observed |
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| circular, consensus*, design*, keepArtifacts and 1 more | Observed |
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| dntpMM, mgMM, naMM, oligoNM and 3 more | Observed |
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| bothStrands, seed, sequences*, width | Observed |
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| limit, maxMismatches, motif*, searchReverseStrand and 1 more | Observed |
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| input* | Observed |
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| agarosePercent, ampliconMax, ampliconMin, candidatesPerTarget and 4 more | Observed |
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| background, bothStrands, constraint*, count and 5 more | Observed |
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| bothStrands, lmax, parts*, strategy | Observed |
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| dilutionFactor, factorPerOd, od600*, organism and 4 more | Observed |
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| dntpMM, mgMM, naMM, oligoNM and 1 more | Observed |
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| a*, alphabet, b, partition and 1 more | Observed |
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| dntpMM, fasta, internalThresholdDG, maxConflicts and 5 more | Observed |
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| genes*, includeGenbank, name, optimiseFor and 3 more | Observed |
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| cdsEnd, cdsStart, maxPromoterMismatches, sequence* | Observed |
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| sourceSpecies, symbols*, targetSpecies*, type | Observed |
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| candidates*, readBases*, readChannels* | Observed |
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| gap, gapOpen, match, mismatch and 3 more | Observed |
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| text* | Observed |
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| asGenbank, limit, seqid, sequence and 1 more | Observed |
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| fileBase64*, fileName, includeTraces | Observed |
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| featureLimit, fileBase64*, fileName, includeSequence | Observed |
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| name, text* | Observed |
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| includeSequence, kinds, limit, maxLength and 2 more | Observed |
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| bootstrapReplicates, sequenceType, sequences* | Observed |
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| circular, sequence* | Observed |
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| circular, sequence* | Observed |
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| circular, goldenGateEnzymes, minRepeatLength, sequence* | Observed |
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| circular, sequence*, topN | Observed |
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| circular, sequence*, topN | Observed |
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| editEnd*, editStart*, frameStart, insertedSeq and 3 more | Observed |
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| cellType, sequence*, topN, use5Folds | Observed |
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| newSequence*, overlapLength, pbsLength, replaceEnd* and 2 more | Observed |
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| ampliconMax, ampliconMin, dntpMM, excludedRegions and 19 more | Observed |
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| annealingTemp, circular, maxMismatches, primer* and 2 more | Observed |
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| background, forwardPrimer*, intendedTemplate, maxMismatches and 2 more | Observed |
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| candidatePool, exclude, gcMax, gcMin and 6 more | Observed |
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| bothStrands, limit, sequence* | Observed |
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| maxMass, maxPeptides, minMass, missedCleavages and 2 more | Observed |
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| jobId* | Observed |
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| appl, goterms, sequence* | Observed |
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| scale, sequence*, window | Observed |
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| a280, chargeStep, dilution, pathLengthCm and 1 more | Observed |
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| ampliconMax, ampliconMin, dntpMM, gcMax and 12 more | Observed |
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| controlReference*, controlTarget*, referenceEfficiency, sampleReference* and 2 more | Observed |
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| gcContent, kind, length* | Observed |
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| antiShineDalgarno, cds*, currentUtr, leader and 2 more | Observed |
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| antiShineDalgarno, cds*, leader, librarySize and 2 more | Observed |
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| maxLoop, minStem, sequence*, startCodonAt | Observed |
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| antiShineDalgarno, end, sequence*, start | Observed |
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| candidates*, maxMismatches, primers*, usableFrom and 1 more | Observed |
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| circular, includeSequences, maxPairs, minRepeatLength and 1 more | Observed |
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| circular, enzymes, sequence* | Observed |
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| sequence*, type | Observed |
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| mode, organism, protein* | Observed |
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| aptamerEnd, aptamerStart, sequence*, siteEnd and 2 more | Observed |
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| sequence* | Observed |
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| fasta, minIdentity, minOverlap, noTrim and 2 more | Observed |
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| controlBases*, controlChannels*, cutPosition*, editedBases* and 5 more | Observed |
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| altAllele, controlBases*, controlChannels*, cutPosition and 10 more | Observed |
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| circular, grouping, insertEnd, insertLabel and 5 more | Observed |
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| circular, fileBase64, fileName, minCoverage and 2 more | Observed |
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| args*, tool* | Observed |
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| input*, qualityOffset | Observed |
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| accession*, db, end, format and 2 more | Observed |
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| from, input*, to | Observed |
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| circular, endPrimerLength, maxOrfs, minOrfAa and 1 more | Observed |
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| db, gene, maxResults, organism and 1 more | Observed |
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| breakpointTolerance, circular, minSupportingReads, minSvLength and 4 more | Observed |
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| entries | Observed |
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| names, sessionId* | Observed |
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| args, fromSession, sessionId*, tool* and 1 more | Observed |
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| entries*, sessionId* | Observed |
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| minReynolds, shRnaLoop, target* | Observed |
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| armTmTarget, deleteLength, dntpMM, editKind and 13 more | Observed |
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| concentration*, concentrationUnit, molarMass, reagent and 2 more | Observed |
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| includeProfile, repeatMin, sequence*, window | Observed |
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| fileBase64*, fileName, mixedRatio, qualityCutoff | Observed |
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| baseCalls*, channelA*, channelC*, channelG* and 7 more | Observed |
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| frame, sequence*, toStop | Observed |
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| assembly, variant* | Observed |
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| coding, frameStart, query*, reference* | Observed |
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| addSecondaryMismatch, altAllele, armTmTarget, flank and 9 more | Observed |
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| id*, includeSequence | Observed |
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| category, feature, limit, maxLength and 2 more | Observed |
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| armTmTarget, chewBackLen, circular, claimedConstruct* and 21 more | Observed |
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| claimedConstruct*, constructCircular, expectedFrameStart, insertForwardPrimer* and 4 more | Observed |
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| circular, enzymes, ladder, sequence* | Observed |
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| rows* | Observed |
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| max_results, query* | Observed |
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| circular, consensus*, design* | Observed |
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| input*, steps* | Observed |
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| MCP prompts 4 Not read by AI. | |
| no inputs | Not read |
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| no inputs | Not read |
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| no inputs | Not read |
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| no inputs | Not read |
| |
Not observed in this Passport: A2A skills, MCP resources, OpenAPI operations.
The atlas shows each capability by its plain identifier, inputs and declared sign-in. Publisher descriptions, paths, links and source evidence are not published here.
The comparison with the previous observation is shown only to the account that recorded it.
Atlas history
1 observation
- 157 capabilities · MCP 2026-07-28 · MCP endpoint validFirst observation
Fingerprint and versions
- Fingerprint
45941e26872b660b19000d73689064c5a884ebbb537dbed6c6242815e29a41a6- Passport schema
- 0.5.0, passport-semantic-v4
- Consistency
- MCP_PROMPTS_ADVERTISEMENT_LIST: match · MCP_RESOURCES_ADVERTISEMENT_LIST: not applicable · MCP_TOOLS_ADVERTISEMENT_LIST: match · OPENAPI_MCP_EXPLICIT_MAPPING: not applicable
Each class compares an observation with the previous atlas observation. Runs of unchanged observations are grouped. Struck values are what the previous observation recorded; inserted values are what this one recorded.
Declared and observed
153 tools declare hints; the AI readings agree with all 0 that have a reading.
A disagreement is not a finding about the service: either side can be wrong. How we compare declarations and readings.
About this entry
com.seqbench/workbenchListedOfficial MCP Registry · first listed 25 Sep 2026 · last listed 3 Nov 2026
Passive observations of a public interface listed in the Official MCP Registry. An observation does not verify security, ownership or compliance, and InterfaceDelta assigns no scores or rankings. Methodology · Report an inaccuracy · Ask for removal
Identity and snapshot
- Target key
sha256:40de7ad435bb269217fb05e3ee3ea91f25d3f5d26c7736dbbcb4061fb9157c42- Locator SHA-256
a15614a0bc632d7a9f1c11b6a97c074e46e61a6d6329c12d7246f23124a633e4- Snapshot generated
- 13 Nov 2026, 10:41 UTC
The entry is one exact observed target, not a real-world service identity, and implies no ownership. Endpoint paths are not published; the locator hash lets an operator confirm their own URL.

